Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
THCA | rs10923621 | chr1:119116725 | C/T | 3.64E-5 | 490 | 16.23 | 15.33 | 14.57 | KM Plot |
THCA | rs10923625 | chr1:119125042 | G/A | 3.64E-5 | 490 | 16.23 | 15.33 | 14.57 | KM Plot |
THCA | rs10927869 | chr1:16185858 | T/C | 0.000181 | 487 | 15.27 | 17.33 | 17.77 | KM Plot |
THCA | rs10937924 | chr4:3374898 | T/C | 2.73E-5 | 482 | 12.1 | 15.7 | 16.83 | KM Plot |
THCA | rs10948127 | chr6:44141685 | C/G | 4.44E-15 | 490 | 5.8 | 12.93 | 16.37 | KM Plot |
THCA | rs10948971 | chr6:55949029 | A/T | 3.58E-6 | 479 | 16.6 | 14.9 | 13.83 | KM Plot |
THCA | rs10972695 | chr9:36026455 | T/G | 9.08E-6 | 472 | 15.9 | 15.08 | 17.93 | KM Plot |
THCA | rs10989474 | chr9:104089494 | A/G | 0 | 490 | 5.8 | 14.03 | 16.37 | KM Plot |
THCA | rs10992162 | chr9:94688429 | C/T | 3.72E-12 | 486 | 16.02 | 16.37 | 15.83 | KM Plot |
THCA | rs10992165 | chr9:94689777 | A/G | 1.76E-12 | 485 | 15.9 | 16.57 | 14.98 | KM Plot |
THCA | rs10995555 | chr10:52833765 | T/C | 2.87E-6 | 487 | 12.33 | 18.18 | 15.15 | KM Plot |
THCA | rs10999596 | chr10:72702412 | G/C | 1.78E-5 | 477 | 15 | 18.8 | 15.92 | KM Plot |
THCA | rs11021546 | chr11:96084542 | A/C | 7.41E-5 | 486 | 15.83 | 15.9 | 22.45 | KM Plot |
THCA | rs11021551 | chr11:96089711 | T/C | 7.58E-5 | 485 | 15.77 | 15.9 | 22.45 | KM Plot |
THCA | rs11021554 | chr11:96098968 | T/C | 7.53E-5 | 486 | 15.83 | 15.9 | 22.45 | KM Plot |